Category: Papers by CGEB labs

Statistical analysis of expressed sequence tags.

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Statistical analysis of expressed sequence tags.
Methods Mol Biol. 2009;533:277-87
Authors: Susko E, Roger AJ
Abstract
Expressed sequence tag (EST) surveys are an efficient way to characteriz…

On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales.

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On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales.
Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5865-70
Authors: Zhaxybayeva O, Swithers KS, Lapierre P, Fournier G…

Genomics. Green evolution, green revolution.

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Genomics. Green evolution, green revolution.
Science. 2009 Apr 10;324(5924):191-2
Authors: Archibald JM
PMID: 19359572 [PubMed – indexed for MEDLINE]

Bootstrap support is not first-order correct.

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Bootstrap support is not first-order correct.
Syst Biol. 2009 Apr;58(2):211-23
Authors: Susko E
Abstract
The appropriate interpretation of bootstrap support for splits and the question of wha…

Trade-offs between efficiency and robustness in bacterial metabolic networks are associated with niche breadth.

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Trade-offs between efficiency and robustness in bacterial metabolic networks are associated with niche breadth.
J Mol Evol. 2009 May;68(5):506-15
Authors: Morine MJ, Gu H, Myers RA, Bielawski JP
Abst…

Evolution of ultrasmall spliceosomal introns in highly reduced nuclear genomes.

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Evolution of ultrasmall spliceosomal introns in highly reduced nuclear genomes.
Mol Biol Evol. 2009 Aug;26(8):1699-705
Authors: Slamovits CH, Keeling PJ
Abstract
Intron reduction and loss is …

Integron gene cassettes and degradation of compounds associated with industrial waste: the case of the Sydney tar ponds.

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Integron gene cassettes and degradation of compounds associated with industrial waste: the case of the Sydney tar ponds.
PLoS One. 2009;4(4):e5276
Authors: Koenig JE, Sharp C, Dlutek M, Curtis B, Joss M, Bo…

On the origin of prokaryotic species.

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On the origin of prokaryotic species.
Genome Res. 2009 May;19(5):744-56
Authors: Doolittle WF, Zhaxybayeva O
Abstract
The notion that all prokaryotes belong to genomically and phenomically co…

Predicting proteomes of mitochondria and related organelles from genomic and expressed sequence tag data.

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Predicting proteomes of mitochondria and related organelles from genomic and expressed sequence tag data.
Methods Enzymol. 2009;457:21-47
Authors: Gaston D, Tsaousis AD, Roger AJ
Abstract
In e…

The practice of classification and the theory of evolution, and what the demise of Charles Darwin's tree of life hypothesis means for both of them.

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The practice of classification and the theory of evolution, and what the demise of Charles Darwin’s tree of life hypothesis means for both of them.
Philos Trans R Soc Lond B Biol Sci. 2009 Aug 12;364(1527):2221-8