Category: Papers by CGEB labs

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Light microscopic observations, ultrastructure, and molecular phylogeny of Hicanonectes teleskopos n. g., n. sp., a deep-branching relative of diplomonads.
J Eukaryot Microbiol. 2009 Jul-Aug;56(4):373-84
Auth…

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Going, going, not quite gone: nucleomorphs as a case study in nuclear genome reduction.
J Hered. 2009 Sep-Oct;100(5):582-90
Authors: Archibald JM, Lane CE
Abstract
Nucleomorphs are the relic …

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GenGIS: A geospatial information system for genomic data.
Genome Res. 2009 Oct;19(10):1896-904
Authors: Parks DH, Porter M, Churcher S, Wang S, Blouin C, Whalley J, Brooks S, Beiko RG
Abstract
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Reconciling ecological and genomic divergence among lineages of listeria under an “extended mosaic genome concept”.
Mol Biol Evol. 2009 Nov;26(11):2605-15
Authors: Dunn KA, Bielawski JP, Ward TJ, Urquhart C,…

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Eradicating typological thinking in prokaryotic systematics and evolution.
Cold Spring Harb Symp Quant Biol. 2009;74:197-204
Authors: Doolittle WF
Abstract
In 1982, John Maynard Smith called f…

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Nucleomorph genomes.
Annu Rev Genet. 2009;43:251-64
Authors: Moore CE, Archibald JM
Abstract
Nucleomorphs are the remnant nuclei of algal endosymbionts in cryptophytes and chlorarachniophytes…

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General heterotachy and distance method adjustments.
Mol Biol Evol. 2009 Dec;26(12):2689-97
Authors: Wu J, Susko E
Abstract
Heterotachy is a general term to describe positions in a sequence t…

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PROCOV: maximum likelihood estimation of protein phylogeny under covarion models and site-specific covarion pattern analysis.
BMC Evol Biol. 2009;9:225
Authors: Wang HC, Susko E, Roger AJ
Abstract
…

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Reproducing the manual annotation of multiple sequence alignments using a SVM classifier.
Bioinformatics. 2009 Dec 1;25(23):3093-8
Authors: Blouin C, Perry S, Lavell A, Susko E, Roger AJ
Abstract
…

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Phylogenetic distributions and histories of proteins involved in anaerobic pyruvate metabolism in eukaryotes.
Mol Biol Evol. 2010 Feb;27(2):311-24
Authors: Hug LA, Stechmann A, Roger AJ
Abstract
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