Category: Uncategorized

Jul 31

The ultrastructure of Ancyromonas, a eukaryote without supergroup affinities.

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The ultrastructure of Ancyromonas, a eukaryote without supergroup affinities.
Protist. 2011 Jul;162(3):373-93
Authors: Heiss AA, Walker G, Simpson AG
Abstract
The small heterotrophic flagella…

Jul 31

Improved least squares topology testing and estimation.

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Improved least squares topology testing and estimation.
Syst Biol. 2011 Oct;60(5):668-75
Authors: Susko E
Abstract
Generalized least squares (GLS) methods provide a relatively fast means of c…

Jul 31

The parameters of the Barry and Hartigan general Markov model are statistically nonidentifiable.

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The parameters of the Barry and Hartigan general Markov model are statistically nonidentifiable.
Syst Biol. 2011 Dec;60(6):872-5
Authors: Zou L, Susko E, Field C, Roger AJ
PMID: 21471307 [PubMed – in…

Jul 31

Comment on "Does constructive neutral evolution play an important role in the origin of cellular complexity?" DOI 10.1002/bies.201100010.

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Comment on “Does constructive neutral evolution play an important role in the origin of cellular complexity?” DOI 10.1002/bies.201100010.
Bioessays. 2011 Jun;33(6):427-9
Authors: Doolittle WF, Lukeš J, Arch…

Jul 31

Genomic characterization of Neoparamoeba pemaquidensis (Amoebozoa) and its kinetoplastid endosymbiont.

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Genomic characterization of Neoparamoeba pemaquidensis (Amoebozoa) and its kinetoplastid endosymbiont.
Eukaryot Cell. 2011 Aug;10(8):1143-6
Authors: Tanifuji G, Kim E, Onodera NT, Gibeault R, Dlutek M, Cawt…

Jul 31

Telling the whole story in a 10,000-genome world.

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Telling the whole story in a 10,000-genome world.
Biol Direct. 2011;6:34
Authors: Beiko RG
Abstract
BACKGROUND: Genome sequencing has revolutionized our view of the relationships among genom…

Jul 31

Classifying short genomic fragments from novel lineages using composition and homology.

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Classifying short genomic fragments from novel lineages using composition and homology.
BMC Bioinformatics. 2011;12:328
Authors: Parks DH, MacDonald NJ, Beiko RG
Abstract
BACKGROUND: The ass…

Jul 31

A phylogenetic mixture model for the identification of functionally divergent protein residues.

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A phylogenetic mixture model for the identification of functionally divergent protein residues.
Bioinformatics. 2011 Oct 1;27(19):2655-63
Authors: Gaston D, Susko E, Roger AJ
Abstract
MOTIVATI…

Jul 31

Phylogenetic position of Lophomonas striata Bütschli (Parabasalia) from the hindgut of the cockroach Periplaneta americana.

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Phylogenetic position of Lophomonas striata Bütschli (Parabasalia) from the hindgut of the cockroach Periplaneta americana.
Protist. 2012 Mar;163(2):274-83
Authors: Gile GH, Slamovits CH
Abstract
…

Jul 31

Complete modification maps for the cytosolic small and large subunit rRNAs of Euglena gracilis: functional and evolutionary implications of contrasting patterns between the two rRNA components.

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Complete modification maps for the cytosolic small and large subunit rRNAs of Euglena gracilis: functional and evolutionary implications of contrasting patterns between the two rRNA components.
J Mol Biol. 2011 Oct 1…