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Low level of sequence diversity at merozoite surface protein-1 locus of Plasmodium ovale curtisi and P. ovale wallikeri from Thai isolates.

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Low level of sequence diversity at merozoite surface protein-1 locus of Plasmodium ovale curtisi and P. ovale wallikeri from Thai isolates.

PLoS One. 2013;8(3):e58962

Authors: Putaporntip C, Hughes AL, Jongwutiwes S

Abstract
BACKGROUND: The merozoite surface protein-1 (MSP-1) is a candidate target for the development of blood stage vaccines against malaria. Polymorphism in MSP-1 can be useful as a genetic marker for strain differentiation in malarial parasites. Although sequence diversity in the MSP-1 locus has been extensively analyzed in field isolates of Plasmodium falciparum and P. vivax, the extent of variation in its homologues in P. ovale curtisi and P. ovale wallikeri, remains unknown.
METHODOLOGY/PRINCIPAL FINDINGS: Analysis of the mitochondrial cytochrome b sequences of 10 P. ovale isolates from symptomatic malaria patients from diverse endemic areas of Thailand revealed co-existence of P. ovale curtisi (n = 5) and P. ovale wallikeri (n = 5). Direct sequencing of the PCR-amplified products encompassing the entire coding region of MSP-1 of P. ovale curtisi (PocMSP-1) and P. ovale wallikeri (PowMSP-1) has identified 3 imperfect repeated segments in the former and one in the latter. Most amino acid differences between these proteins were located in the interspecies variable domains of malarial MSP-1. Synonymous nucleotide diversity (πS) exceeded nonsynonymous nucleotide diversity (πN) for both PocMSP-1 and PowMSP-1, albeit at a non-significant level. However, when MSP-1 of both these species was considered together, πS was significantly greater than πN (p<0.0001), suggesting that purifying selection has shaped diversity at this locus prior to speciation. Phylogenetic analysis based on conserved domains has placed PocMSP-1 and PowMSP-1 in a distinct bifurcating branch that probably diverged from each other around 4.5 million years ago.
CONCLUSION/SIGNIFICANCE: The MSP-1 sequences support that P. ovale curtisi and P. ovale wallikeri are distinct species. Both species are sympatric in Thailand. The low level of sequence diversity in PocMSP-1 and PowMSP-1 among Thai isolates could stem from persistent low prevalence of these species, limiting the chance of outcrossing at this locus.

PMID: 23536840 [PubMed – indexed for MEDLINE]

Extensive Differences in Gene Expression between Symbiotic and Aposymbiotic Cnidarians.

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Extensive Differences in Gene Expression between Symbiotic and Aposymbiotic Cnidarians.
G3 (Bethesda). 2013 Dec 24;
Authors: Lehnert EM, Mouchka ME, Burriesci MS, Gallo ND, Schwarz JA, Pringle JR
Abs…

SPANNER: taxonomic assignment of sequences using pyramid matching of similarity profiles.

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SPANNER: taxonomic assignment of sequences using pyramid matching of similarity profiles.
Bioinformatics. 2013 Aug 1;29(15):1858-64
Authors: Porter MS, Beiko RG
Abstract
BACKGROUND: Homology…

The site-wise log-likelihood score is a good predictor of genes under positive selection.

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The site-wise log-likelihood score is a good predictor of genes under positive selection.
J Mol Evol. 2013 May;76(5):280-94
Authors: Wang HC, Susko E, Roger AJ
Abstract
The strength and direc…

The spliceosomal catalytic core arose in the RNA world… or did it?

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The spliceosomal catalytic core arose in the RNA world… or did it?

Genome Biol. 2013 Dec 13;14(12):141

Authors: Doolittle WF

Abstract
A new study adds to the evidence for a common evolutionary origin of the spliceosome and group II introns, but RNA-world questions remain.

PMID: 24330866 [PubMed – as supplied by publisher]

Treetrimmer: a method for phylogenetic dataset size reduction.

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Treetrimmer: a method for phylogenetic dataset size reduction.
BMC Res Notes. 2013;6:145
Authors: Maruyama S, Eveleigh RJ, Archibald JM
Abstract
BACKGROUND: With rapid advances in genome seq…

Colponemids Represent Multiple Ancient Alveolate Lineages.

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Colponemids Represent Multiple Ancient Alveolate Lineages.

Curr Biol. 2013 Dec 3;

Authors: Janouškovec J, Tikhonenkov DV, Mikhailov KV, Simdyanov TG, Aleoshin VV, Mylnikov AP, Keeling PJ

Abstract
The alveolates comprise three well-studied protist lineages of significant environmental, medical, and economical importance: apicomplexans (e.g., Plasmodium), dinoflagellates (e.g., Symbiodinium), and ciliates (e.g., Tetrahymena). These major lineages have evolved distinct and unusual characteristics, the origins of which have proved to be difficult evolutionary puzzles. Mitochondrial genomes are a prime example: all three groups depart from canonical form and content, but in different ways. Reconstructing such ancient transitions is difficult without deep-branching lineages that retain ancestral characteristics. Here we describe two such lineages and how they illuminate the ancestral state of alveolate mitochondrial genomes. We established five clonal cultures of colponemids, predatory alveolates without cultured representatives and molecular data. Colponemids represent at least two independent lineages at the phylum level in multilocus phylogenetic analysis; one sister to apicomplexans and dinoflagellates, and the other at a deeper position. A genome survey from one strain showed that ancestral state of the mitochondrial genomes in the three major alveolate lineages consisted of an unusual linear chromosome with telomeres and a substantially larger gene set than known alveolates. Colponemid sequences also identified several environmental lineages as colponemids, altogether suggesting an untapped potential for understanding the origin and evolution of apicomplexans, dinoflagellates, and ciliates.

PMID: 24316202 [PubMed – as supplied by publisher]

The Chloroplast Genome of a Symbiodinium sp. Clade C3 Isolate.

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The Chloroplast Genome of a Symbiodinium sp. Clade C3 Isolate.
Protist. 2013 Oct 17;165(1):1-13
Authors: Barbrook AC, Voolstra CR, Howe CJ
Abstract
Dinoflagellate algae of the genus Symbiodini…

Endosymbiotic gene transfer in tertiary plastid-containing dinoflagellates.

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Endosymbiotic gene transfer in tertiary plastid-containing dinoflagellates.
Eukaryot Cell. 2013 Dec 2;
Authors: Burki F, Imanian B, Hehenberger E, Hirakawa Y, Maruyama S, Keeling PJ
Abstract
P…

Horizontal Gene Transfer is a Significant Driver of Gene Innovation in Dinoflagellates.

Horizontal Gene Transfer is a Significant Driver of Gene Innovation in Dinoflagellates.
Genome Biol Evol. 2013 Nov 19;
Authors: Wisecaver JH, Brosnahan ML, Hackett JD
Abstract
The dinoflagellates are an evolu…