Blast2Go is organizing courses on automated functional annotation – Go here for info and registration
Cost reduction in sequencing technologies is resulting in a growing number of laboratories getting involved in genome sequencing projects where a large amount of sequencing data is generated. After assembly, a large amount of unique sequences are obtained which need to be further characterized with putative functions. Good and sufficient functional annotations are decisive for follow up analyses such as gene expression, strain variations, tissue functional profiling, etc.
The course will teach on the principals and practical aspects of automated functional annotation of (novel) sequence data.
Participants will learn how to :
Create and run standard or costumed pipelines for generating functional labels for sequence data.
Design annotation strategies and generate different annotation types
Create a local database installation for annotation speed up
Evaluate and report the results of the functional annotation pipeline
Perform data-mining and knowledge discovery using functional annotation and experimental data
Study similarities and differences between annotation datasets
Generate and modify knowledge-containing functional annotation graphs
The course will be based on the use of Blast2GO application and will mainly comprise exercises and practical cases. Participants might bring their own data.
Who should attend? Experimentalists and bioinformaticians working on EST, Next Generation Sequencing andmicroarray design projects, specially (but not exclusively) of non-model species.