October 2020 archive

The Molecular Diversity of Phagotrophic Euglenids Examined Using Single-cell Methods.

Related Articles The Molecular Diversity of Phagotrophic Euglenids Examined Using Single-cell Methods. Protist. 2020 Aug 16;171(5):125757 Authors: Lax G, Simpson AGB Abstract Euglenids are a diverse group of euglenozoan flagellates that includes phototrophs, osmotrophs, and phagotrophs. Despite making up most of the phylogenetic diversity of euglenids, phagotrophs remain understudied, and recent work has focused on …

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Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis. Nucleic Acids Res. 2020 Oct 22;: Authors: Matzov D, Taoka M, Nobe Y, Yamauchi Y, Halfon Y, Asis N, Zimermann E, Rozenberg H, Bashan A, Bhushan S, Isobe T, Gray MW, Yonath A, Shalev-Benami M Abstract Ribosomal RNA is the central component of the …

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Integrated omics unveil the secondary metabolic landscape of a basal dinoflagellate.

Integrated omics unveil the secondary metabolic landscape of a basal dinoflagellate.
BMC Biol. 2020 Oct 13;18(1):139
Authors: Beedessee G, Kubota T, Arimoto A, Nishitsuji K, Waller RF, Hisata K, Yamasaki S, Satoh N…

Single cell transcriptomics of ABEDINIUM reveals a new early-branching dinoflagellate lineage.

Single cell transcriptomics of ABEDINIUM reveals a new early-branching dinoflagellate lineage.
Genome Biol Evol. 2020 Oct 12;:
Authors: Cooney EC, Okamoto N, Cho A, Hehenberger E, Richards TA, Santoro AE, Worden AZ…

Integrated omics unveil the secondary metabolic landscape of a basal dinoflagellate

CONCLUSIONS: Our genomic findings suggest intricate integration of various metabolic enzymes that function iteratively to synthesize metabolites, providing mechanistic insights into how dinoflagellates synthesize secondary metabolites, depending upon nutrient availability. This study provides insights into toxin production associated with dinoflagellate blooms. The genome of this basal dinoflagellate provides important clues about dinoflagellate evolution and overcomes the large genome size,…

Single-Cell Transcriptomics of Abedinium Reveals a New Early-Branching Dinoflagellate Lineage

Dinoflagellates possess many cellular characteristics with unresolved evolutionary histories. These include nuclei with greatly expanded genomes and chromatin packaged using histone-like proteins and dinoflagellate-viral nucleoproteins instead of histones, highly reduced mitochondrial genomes with extensive RNA editing, a mix of photosynthetic and cryptic secondary plastids, and tertiary plastids. Resolving the evolutionary origin of these traits requires understanding their ancestral states and…

Cryptomonads.

Cryptomonads. Curr Biol. 2020 Oct 05;30(19):R1114-R1116 Authors: Archibald JM Abstract John Archibald introduces cryptomonads, an important group of protists. PMID: 33022250 [PubMed – as supplied by publisher]

Putative genome features of relic green alga-derived nuclei in dinoflagellates and future perspectives as model organisms.

Putative genome features of relic green alga-derived nuclei in dinoflagellates and future perspectives as model organisms.
Commun Integr Biol. 2020 Jun 21;13(1):84-88
Authors: Nakayama T, Takahashi K, Kamikawa R,…

Comparative Plastid Genomics of Non-Photosynthetic Chrysophytes: Genome Reduction and Compaction.

Comparative Plastid Genomics of Non-Photosynthetic Chrysophytes: Genome Reduction and Compaction. Front Plant Sci. 2020;11:572703 Authors: Kim JI, Jeong M, Archibald JM, Shin W Abstract Spumella-like heterotrophic chrysophytes are important eukaryotic microorganisms that feed on bacteria in aquatic and soil environments. They are characterized by their lack of pigmentation, naked cell surface, and extremely small size. …

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Putative genome features of relic green alga-derived nuclei in dinoflagellates and future perspectives as model organisms

Nucleomorphs, relic endosymbiont nuclei, have been studied as a model to elucidate the evolutionary process of integrating a eukaryotic endosymbiont into a host cell organelle. Recently, we reported two new dinoflagellates possessing nucleomorphs, and proposed them as new models in this research field based on the following findings: genome integration processes are incomplete, and the origins of the endosymbiont lineages were pinpointed. Here, we focused on the nucleomorph genome features in…