Horizontal gene transfer and redundancy of tryptophan biosynthetic enzymes in dinotoms.
Genome Biol Evol. 2014 Jan 21;
Authors: Imanian B, Keeling PJ
Abstract
A tertiary endosymbiosis between a dinoflagellate…
January 2014 archive
Jan 23
Horizontal gene transfer and redundancy of tryptophan biosynthetic enzymes in dinotoms.
Jan 23
Global analysis of apicomplexan protein S-acyl transferases reveals an enzyme essential for invasion.
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Global analysis of apicomplexan protein S-acyl transferases reveals an enzyme essential for invasion.
Traffic. 2013 Aug;14(8):895-911
Authors: Frénal K, Tay CL, Mueller C, Bushell ES, Jia Y, Graindorge A, Billker O, Rayner JC, Soldati-Favre D
Abstract
The advent of techniques to study palmitoylation on a whole proteome scale has revealed that it is an important reversible modification that plays a role in regulating multiple biological processes. Palmitoylation can control the affinity of a protein for lipid membranes, which allows it to impact protein trafficking, stability, folding, signalling and interactions. The publication of the palmitome of the schizont stage of Plasmodium falciparum implicated a role for palmitoylation in host cell invasion, protein export and organelle biogenesis. However, nothing is known so far about the repertoire of protein S-acyl transferases (PATs) that catalyse this modification in Apicomplexa. We undertook a comprehensive analysis of the repertoire of Asp-His-His-Cys cysteine-rich domain (DHHC-CRD) PAT family in Toxoplasma gondii and Plasmodium berghei by assessing their localization and essentiality. Unlike functional redundancies reported in other eukaryotes, some apicomplexan-specific DHHCs are essential for parasite growth, and several are targeted to organelles unique to this phylum. Of particular interest is DHHC7, which localizes to rhoptry organelles in all parasites tested, including the major human pathogen P. falciparum. TgDHHC7 interferes with the localization of the rhoptry palmitoylated protein TgARO and affects the apical positioning of the rhoptry organelles. This PAT has a major impact on T. gondii host cell invasion, but not on the parasite’s ability to egress.
PMID: 23638681 [PubMed – indexed for MEDLINE]
Jan 22
Transcriptome de novo assembly sequencing and analysis of the toxic dinoflagellate Alexandrium catenella using the Illumina platform.
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Transcriptome de novo assembly sequencing and analysis of the toxic dinoflagellate Alexandrium catenella using the Illumina platform.
Gene. 2014 Jan 15;
Authors: Zhang S, Sui Z, Chang L, Kang K, Ma J, Kong F…
Jan 18
Genetic diversity of Cryptosporidium isolates from patients in North India.
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Genetic diversity of Cryptosporidium isolates from patients in North India.
Int J Infect Dis. 2013 Aug;17(8):e601-5
Authors: Sharma P, Sharma A, Sehgal R, Malla N, Khurana S
Abstract
BACKGROU…
Jan 10
Acyl-homoserine lactone quorum sensing in the roseobacter clade.
Acyl-homoserine lactone quorum sensing in the roseobacter clade.
Int J Mol Sci. 2014;15(1):654-69
Authors: Zan J, Liu Y, Fuqua C, Hill RT
Abstract
Members of the Roseobacter clade are ecologically important a…
Jan 01
Low level of sequence diversity at merozoite surface protein-1 locus of Plasmodium ovale curtisi and P. ovale wallikeri from Thai isolates.
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Low level of sequence diversity at merozoite surface protein-1 locus of Plasmodium ovale curtisi and P. ovale wallikeri from Thai isolates.
PLoS One. 2013;8(3):e58962
Authors: Putaporntip C, Hughes AL, Jongwutiwes S
Abstract
BACKGROUND: The merozoite surface protein-1 (MSP-1) is a candidate target for the development of blood stage vaccines against malaria. Polymorphism in MSP-1 can be useful as a genetic marker for strain differentiation in malarial parasites. Although sequence diversity in the MSP-1 locus has been extensively analyzed in field isolates of Plasmodium falciparum and P. vivax, the extent of variation in its homologues in P. ovale curtisi and P. ovale wallikeri, remains unknown.
METHODOLOGY/PRINCIPAL FINDINGS: Analysis of the mitochondrial cytochrome b sequences of 10 P. ovale isolates from symptomatic malaria patients from diverse endemic areas of Thailand revealed co-existence of P. ovale curtisi (n = 5) and P. ovale wallikeri (n = 5). Direct sequencing of the PCR-amplified products encompassing the entire coding region of MSP-1 of P. ovale curtisi (PocMSP-1) and P. ovale wallikeri (PowMSP-1) has identified 3 imperfect repeated segments in the former and one in the latter. Most amino acid differences between these proteins were located in the interspecies variable domains of malarial MSP-1. Synonymous nucleotide diversity (πS) exceeded nonsynonymous nucleotide diversity (πN) for both PocMSP-1 and PowMSP-1, albeit at a non-significant level. However, when MSP-1 of both these species was considered together, πS was significantly greater than πN (p<0.0001), suggesting that purifying selection has shaped diversity at this locus prior to speciation. Phylogenetic analysis based on conserved domains has placed PocMSP-1 and PowMSP-1 in a distinct bifurcating branch that probably diverged from each other around 4.5 million years ago.
CONCLUSION/SIGNIFICANCE: The MSP-1 sequences support that P. ovale curtisi and P. ovale wallikeri are distinct species. Both species are sympatric in Thailand. The low level of sequence diversity in PocMSP-1 and PowMSP-1 among Thai isolates could stem from persistent low prevalence of these species, limiting the chance of outcrossing at this locus.
PMID: 23536840 [PubMed – indexed for MEDLINE]
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