Category: Dinoflagellate genomics

Photophysiology of kleptoplasts: photosynthetic use of light by chloroplasts living in animal cells.

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Photophysiology of kleptoplasts: photosynthetic use of light by chloroplasts living in animal cells.

Philos Trans R Soc Lond B Biol Sci. 2014;369(1640):20130242

Authors: Serôdio J, Cruz S, Cartaxana P, Calado R

Abstract
Kleptoplasty is a remarkable type of photosynthetic association, resulting from the maintenance of functional chloroplasts-the ‘kleptoplasts’-in the tissues of a non-photosynthetic host. It represents a biologically unique condition for chloroplast and photosynthesis functioning, occurring in different phylogenetic lineages, namely dinoflagellates, ciliates, foraminiferans and, most interestingly, a single taxon of metazoans, the sacoglossan sea slugs. In the case of sea slugs, chloroplasts from macroalgae are often maintained as intracellular organelles in cells of these marine gastropods, structurally intact and photosynthetically competent for extended periods of time. Kleptoplasty has long attracted interest owing to the longevity of functional kleptoplasts in the absence of the original algal nucleus and the limited number of proteins encoded by the chloroplast genome. This review updates the state-of-the-art on kleptoplast photophysiology, focusing on the comparative analysis of the responses to light of the chloroplasts when in their original, macroalgal cells, and when sequestered in animal cells and functioning as kleptoplasts. It covers fundamental but ecologically relevant aspects of kleptoplast light responses, such as the occurrence of photoacclimation in hospite, operation of photoprotective processes and susceptibility to photoinhibition. Emphasis is given to host-mediated processes unique to kleptoplastic associations, reviewing current hypotheses on behavioural photoprotection and host-mediated enhancement of photosynthetic performance, and identifying current gaps in sacoglossan kleptoplast photophysiology research.

PMID: 24591722 [PubMed – in process]

Chromera velia, Endosymbioses and the Rhodoplex Hypothesis – Plastid Evolution in Cryptophytes, Alveolates, Stramenopiles and Haptophytes (CASH Lineages).

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Chromera velia, Endosymbioses and the Rhodoplex Hypothesis – Plastid Evolution in Cryptophytes, Alveolates, Stramenopiles and Haptophytes (CASH Lineages).
Genome Biol Evol. 2014 Feb 25;
Authors: Petersen J, L…

Marine dinoflagellate proteomics: Current status and future perspectives.

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Marine dinoflagellate proteomics: Current status and future perspectives.
J Proteomics. 2014 Feb 3;
Authors: Wang DZ, Zhang H, Zhang Y, Zhang SF
Abstract
Dinoflagellates are not only the impor…

Applications of next-generation sequencing to unravelling the evolutionary history of algae.

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Applications of next-generation sequencing to unravelling the evolutionary history of algae.
Int J Syst Evol Microbiol. 2014 Feb;64(Pt 2):333-45
Authors: Kim KM, Park JH, Bhattacharya D, Yoon HS
Abstr…

Horizontal gene transfer and redundancy of tryptophan biosynthetic enzymes in dinotoms.

Horizontal gene transfer and redundancy of tryptophan biosynthetic enzymes in dinotoms.
Genome Biol Evol. 2014 Jan 21;
Authors: Imanian B, Keeling PJ
Abstract
A tertiary endosymbiosis between a dinoflagellate…

Transcriptome de novo assembly sequencing and analysis of the toxic dinoflagellate Alexandrium catenella using the Illumina platform.

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Transcriptome de novo assembly sequencing and analysis of the toxic dinoflagellate Alexandrium catenella using the Illumina platform.
Gene. 2014 Jan 15;
Authors: Zhang S, Sui Z, Chang L, Kang K, Ma J, Kong F…

Acyl-homoserine lactone quorum sensing in the roseobacter clade.

Acyl-homoserine lactone quorum sensing in the roseobacter clade.
Int J Mol Sci. 2014;15(1):654-69
Authors: Zan J, Liu Y, Fuqua C, Hill RT
Abstract
Members of the Roseobacter clade are ecologically important a…

Extensive Differences in Gene Expression between Symbiotic and Aposymbiotic Cnidarians.

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Extensive Differences in Gene Expression between Symbiotic and Aposymbiotic Cnidarians.
G3 (Bethesda). 2013 Dec 24;
Authors: Lehnert EM, Mouchka ME, Burriesci MS, Gallo ND, Schwarz JA, Pringle JR
Abs…

Colponemids Represent Multiple Ancient Alveolate Lineages.

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Colponemids Represent Multiple Ancient Alveolate Lineages.

Curr Biol. 2013 Dec 3;

Authors: Janouškovec J, Tikhonenkov DV, Mikhailov KV, Simdyanov TG, Aleoshin VV, Mylnikov AP, Keeling PJ

Abstract
The alveolates comprise three well-studied protist lineages of significant environmental, medical, and economical importance: apicomplexans (e.g., Plasmodium), dinoflagellates (e.g., Symbiodinium), and ciliates (e.g., Tetrahymena). These major lineages have evolved distinct and unusual characteristics, the origins of which have proved to be difficult evolutionary puzzles. Mitochondrial genomes are a prime example: all three groups depart from canonical form and content, but in different ways. Reconstructing such ancient transitions is difficult without deep-branching lineages that retain ancestral characteristics. Here we describe two such lineages and how they illuminate the ancestral state of alveolate mitochondrial genomes. We established five clonal cultures of colponemids, predatory alveolates without cultured representatives and molecular data. Colponemids represent at least two independent lineages at the phylum level in multilocus phylogenetic analysis; one sister to apicomplexans and dinoflagellates, and the other at a deeper position. A genome survey from one strain showed that ancestral state of the mitochondrial genomes in the three major alveolate lineages consisted of an unusual linear chromosome with telomeres and a substantially larger gene set than known alveolates. Colponemid sequences also identified several environmental lineages as colponemids, altogether suggesting an untapped potential for understanding the origin and evolution of apicomplexans, dinoflagellates, and ciliates.

PMID: 24316202 [PubMed – as supplied by publisher]

The Chloroplast Genome of a Symbiodinium sp. Clade C3 Isolate.

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The Chloroplast Genome of a Symbiodinium sp. Clade C3 Isolate.
Protist. 2013 Oct 17;165(1):1-13
Authors: Barbrook AC, Voolstra CR, Howe CJ
Abstract
Dinoflagellate algae of the genus Symbiodini…