Related Articles Getting clear about the F-word in genomics. PLoS Genet. 2020 Apr 01;16(4):e1008702 Authors: Linquist S, Doolittle WF, Palazzo AF PMID: 32236092 [PubMed – as supplied by publisher]
Category: Papers by CGEB labs
Mar 04
The draft nuclear genome sequence and predicted mitochondrial proteome of Andalucia godoyi, a protist with the most gene-rich and bacteria-like mitochondrial genome.
Related Articles The draft nuclear genome sequence and predicted mitochondrial proteome of Andalucia godoyi, a protist with the most gene-rich and bacteria-like mitochondrial genome. BMC Biol. 2020 Mar 02;18(1):22 Authors: Gray MW, Burger G, Derelle R, Klimeš V, Leger MM, Sarrasin M, Vlček Č, Roger AJ, Eliáš M, Lang BF Abstract BACKGROUND: Comparative analyses have …
Feb 29
PSORTm: a bacterial and archaeal protein subcellular localization prediction tool for metagenomics data.
Related Articles PSORTm: a bacterial and archaeal protein subcellular localization prediction tool for metagenomics data. Bioinformatics. 2020 Feb 28;: Authors: Peabody MA, Lau WYV, Hoad G, Jia B, Maguire F, Gray KL, Beiko RG, Brinkman FSL Abstract MOTIVATION: Many methods for microbial protein subcellular localization (SCL) prediction exist, however none is readily available for analysis …
Feb 28
Age-Related Variation of Bacterial and Fungal Communities in Different Body Habitats across the Young, Elderly, and Centenarians in Sardinia.
Related Articles Age-Related Variation of Bacterial and Fungal Communities in Different Body Habitats across the Young, Elderly, and Centenarians in Sardinia. mSphere. 2020 Feb 26;5(1): Authors: Wu L, Zeng T, Deligios M, Milanesi L, Langille MGI, Zinellu A, Rubino S, Carru C, Kelvin DJ Abstract Human body microbes interact with the host, forming microbial communities …
Feb 26
Evolution: Two Domains of Life or Three?
Related Articles Evolution: Two Domains of Life or Three? Curr Biol. 2020 Feb 24;30(4):R177-R179 Authors: Doolittle WF Abstract That Bacteria, Archaea and Eukarya (eukaryotes) represent three separate domains of Life, no one having evolved from within any other, has been taken as fact for three decades. Recent work shows this to be untrue. Eukarya arose …
Feb 09
Detection of Helicobacter pylori Microevolution and Multiple Infection from Gastric Biopsies by Housekeeping Gene Amplicon Sequencing.
Related Articles Detection of Helicobacter pylori Microevolution and Multiple Infection from Gastric Biopsies by Housekeeping Gene Amplicon Sequencing. Pathogens. 2020 Feb 05;9(2): Authors: Palau M, Piqué N, Comeau AM, Douglas GM, Ramírez-Lázaro MJ, Lario S, Calvet X, Langille MGI, Miñana-Galbis D Abstract Despite the great efforts devoted to research on Helicobacter pylori, the prevalence of …
Jan 22
Bacterial Taxa and Functions Are Predictive of Sustained Remission Following Exclusive Enteral Nutrition in Pediatric Crohn’s Disease.
Related Articles Bacterial Taxa and Functions Are Predictive of Sustained Remission Following Exclusive Enteral Nutrition in Pediatric Crohn’s Disease. Inflamm Bowel Dis. 2020 Jan 21;: Authors: Jones CMA, Connors J, Dunn KA, Bielawski JP, Comeau AM, Langille MGI, Van Limbergen J Abstract BACKGROUND: The gut microbiome is extensively involved in induction of remission in pediatric …
Jan 19
Piece by Piece: Building a Ribozyme.
Related Articles Piece by Piece: Building a Ribozyme. J Biol Chem. 2020 Jan 17;: Authors: Gray MW, Gopalan V Abstract The ribosome and ribonuclease P (RNase P) are cellular ribonucleoprotein complexes that perform peptide bond synthesis and phosphodiester bond cleavage, respectively. Both are ancient biological assemblies that were already present in the last universal common …
Jan 11
Comparative plastid genomics of Cryptomonas species reveals fine-scale genomic responses to loss of photosynthesis.
Related Articles Comparative plastid genomics of Cryptomonas species reveals fine-scale genomic responses to loss of photosynthesis. Genome Biol Evol. 2020 Jan 10;: Authors: Tanifuji G, Kamikawa R, Moore CE, Mills T, Onodera NT, Kashiyama Y, Archibald JM, Inagaki Y, Hashimoto T Abstract Loss of photosynthesis is a recurring theme in eukaryotic evolution. In organisms that …
Dec 06
The relationship between fecal bile acids and microbiome community structure in pediatric Crohn’s disease.
Related Articles The relationship between fecal bile acids and microbiome community structure in pediatric Crohn’s disease. ISME J. 2019 Dec 03;: Authors: Connors J, Dunn KA, Allott J, Bandsma R, Rashid M, Otley AR, Bielawski JP, Van Limbergen J Abstract Gut microbiome community structure is associated with Crohn’s disease (CD) development and response to therapy. …
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