Related Articles Metagenomic Functional Shifts to Plant Induced Environmental Changes. Front Microbiol. 2019;10:1682 Authors: Yurgel SN, Nearing JT, Douglas GM, Langille MGI Abstract The Vaccinium angustifolium (wild blueberry) agricultural system involves transformation of the environment surrounding the plant to intensify plant propagation and to improve fruit yield, and therefore is an advantageous model to study …
Category: Papers by CGEB labs
Aug 11
Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Related Articles Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol. 2019 Aug 09;: Authors: Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, …
Aug 08
Identification of Primary Antimicrobial Resistance Drivers in Agricultural Nontyphoidal Salmonella enterica Serovars by Using Machine Learning.
Related Articles Identification of Primary Antimicrobial Resistance Drivers in Agricultural Nontyphoidal Salmonella enterica Serovars by Using Machine Learning. mSystems. 2019 Aug 06;4(4): Authors: Maguire F, Rehman MA, Carrillo C, Diarra MS, Beiko RG Abstract Nontyphoidal Salmonella (NTS) is a leading global cause of bacterial foodborne morbidity and mortality. Our ability to treat severe NTS infections …
Jul 26
Genomics reveals alga-associated cyanobacteria hiding in plain sight.
Related Articles Genomics reveals alga-associated cyanobacteria hiding in plain sight. Proc Natl Acad Sci U S A. 2019 Jul 24;: Authors: Archibald JM PMID: 31341089 [PubMed – as supplied by publisher]
Jul 26
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Related Articles Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol. 2019 Jul 24;: Authors: Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, …
Jul 23
Nephromyces represents a diverse and novel lineage of the Apicomplexa that has retained apicoplasts.
Related Articles Nephromyces represents a diverse and novel lineage of the Apicomplexa that has retained apicoplasts. Genome Biol Evol. 2019 Jul 22;: Authors: Muñoz-Gómez SA, Durnin K, Eme L, Paight C, Lane CE, Saffo MB, Slamovits CH Abstract A most interesting exception within the parasitic Apicomplexa is Nephromyces, an extracellular, probably mutualistic, endosymbiont found living …
Jul 07
Introduction to Genome Biology and Diversity.
Related Articles Introduction to Genome Biology and Diversity. Methods Mol Biol. 2019;1910:3-31 Authors: Youssef N, Budd A, Bielawski JP Abstract Organisms display astonishing levels of cell and molecular diversity, including genome size, shape, and architecture. In this chapter, we review how the genome can be viewed as both a structural and an informational unit of …
Jul 07
Looking for Darwin in Genomic Sequences: Validity and Success Depends on the Relationship Between Model and Data.
Related Articles Looking for Darwin in Genomic Sequences: Validity and Success Depends on the Relationship Between Model and Data. Methods Mol Biol. 2019;1910:399-426 Authors: Jones CT, Susko E, Bielawski JP Abstract Codon substitution models (CSMs) are commonly used to infer the history of natural section for a set of protein-coding sequences, often with the explicit …
Jun 26
A natural toroidal microswimmer with a rotary eukaryotic flagellum.
Related Articles A natural toroidal microswimmer with a rotary eukaryotic flagellum. Nat Microbiol. 2019 Jun 10;: Authors: Hess S, Eme L, Roger AJ, Simpson AGB Abstract We describe Idionectes vortex gen. nov., sp. nov., a unicellular microeukaryote that swims by continuous inversion of its surface, similar to a vortex ring. This previously unreported mode of …
May 24
The New Red Algal Subphylum Proteorhodophytina Comprises the Largest and Most Divergent Plastid Genomes Known.
Red algal plastid genomes are often considered ancestral and evolutionarily stable, and thus more closely resembling the last common ancestral plastid genome of all photosynthetic eukaryotes [1, 2]. However, sampling of red algal diversity is still quite limited (e.g., [2-5]). We aimed to remedy this problem. To this end, we sequenced six new plastid genomes …
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